Transcript: lnc-PRKD1-1:3

Basic information

LNCipedia transcript ID: lnc-PRKD1-1:3 
LNCipedia gene ID: lnc-PRKD1-1
Location (hg19): chr14:30637041-30766245
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 917 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00022407
Alternative gene names: XLOC_010987; linc-PRKD1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.7726 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKD1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKD1-1:3
3.1 lnc-PRKD1-1:3
4.0 lnc-PRKD1-1:3
4.1 lnc-PRKD1-1:3
5.0 lnc-PRKD1-1:3
5.1 lnc-EFS-90:3
5.2 lnc-PRKD1-1:3