Transcript: lnc-PRKN-21:7

Basic information

LNCipedia transcript ID: lnc-PRKN-21:7 
LNCipedia gene ID: lnc-PRKN-21
RefSeq ID: NR_033862
Location (hg19): chr6:163759374-163768065
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4931 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011143; NONHSAT115957; NR_033862; NR_033862.1
Alternative gene names: XLOC_005909; linc-PARK2-6; DKFZp451B082


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.8377 non-coding 
CPAT coding probability 21.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKN-21:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL078585.1-1:1
3.1 lnc-AL078585.1-2:1
4.0 lnc-AL078585.1-21:1
4.1 lnc-AL078585.1-21:1
5.0 lnc-AL078585.1-21:1
5.1 lnc-PRKN-21:1
5.2 lnc-PRKN-21:7