Transcript: lnc-PRKN-8:2

Basic information

LNCipedia transcript ID: lnc-PRKN-8:2 
LNCipedia gene ID: lnc-PRKN-8
Location (hg19): chr6:163651007-163665495
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2135 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_3082_NR_028390
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.7328 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKN-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-8:1
4.0 lnc-AL078585.1-8:1
4.1 lnc-AL078585.1-8:1
5.0 lnc-AL078585.1-8:1
5.1 lnc-PRKN-8:1
5.2 lnc-PRKN-8:2