Transcript: lnc-PRL-4:1

Basic information

LNCipedia transcript ID: lnc-PRL-4:1 
LNCipedia gene ID: lnc-PRL-4
Location (hg19): chr6:21980814-21981701
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011466; ENST00000413255; ENST00000413255.1; RP11-377N20.1-001; OTTHUMT00000039991.1; NONHSAT108054
Alternative gene names: XLOC_005639; linc-MBOAT1-2; ENSG00000235767; RP11-377N20.1; ENSG00000235767.1; OTTHUMG00000014344.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRL-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-4:1
3.1 lnc-PRL-4:1
4.0 lnc-PRL-4:1
4.1 lnc-PRL-4:1
5.0 lnc-PRL-4:1
5.1 lnc-C6orf62-73:1
5.2 lnc-PRL-4:1