Transcript: lnc-PROC-1:16

Basic information

LNCipedia transcript ID: lnc-PROC-1:16 
LNCipedia gene ID: lnc-PROC-1
Location (hg19): chr2:128145820-128163492
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 363 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236682.1|FTMT20700012691.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -109.5455 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PROC-1:16 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.
  2. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PROC-1:16
5.0 lnc-PROC-1:16
5.1 lnc-MYO7B-4:17
5.2 lnc-PROC-1:16