Transcript: lnc-PRODH2-5:6

Basic information

LNCipedia transcript ID: lnc-PRODH2-5:6 
LNCipedia gene ID: lnc-PRODH2-5
Location (hg19): chr19:36282869-36288777
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000567313.1; AC002398.5-003; OTTHUMT00000430464.1; NONHSAT065923
Alternative gene names: ENSG00000225872.2; AC002398.5; OTTHUMG00000048120.2; LINC01529;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.0914 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRODH2-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRODH2-1:2
4.0 LINC01529:3
4.1 LINC01529:3
5.0 LINC01529:3
5.1 lnc-SCGB2B2-57:6
5.2 lnc-PRODH2-5:6