Transcript: lnc-PRPF18-2:1

Basic information

LNCipedia transcript ID: lnc-PRPF18-2:1 
LNCipedia gene ID: lnc-PRPF18-2
Location (hg19): chr10:13724521-13726874
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1978 bp
Exons: 2
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000514038; NONHSAT011525; ENST00000600850.1
Alternative gene names: ENSG00000248372; ENSG00000268549.1; RP11-295P9.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.411 non-coding 
CPAT coding probability 15.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRPF18-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRPF18-1:1
3.1 lnc-PRPF18-2:1
4.0 lnc-PRPF18-2:1
4.1 lnc-PRPF18-2:1
5.0 lnc-PRPF18-2:1
5.1 lnc-NPY4R2-362:1
5.2 lnc-PRPF18-2:1