Transcript: lnc-PRPF6-2:4

Basic information

LNCipedia transcript ID: lnc-PRPF6-2:4 
LNCipedia gene ID: lnc-PRPF6-2
Location (hg19): chr20:62601448-62609527
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1105 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054008.1|HBMT00000893966.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.0552 non-coding 
CPAT coding probability 5.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRPF6-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PRPF6-2:4
5.0 lnc-PRPF6-2:4
5.1 lnc-GNAS-85:3
5.2 lnc-PRPF6-2:4