Transcript: lnc-PRR32-1:1

Basic information

LNCipedia transcript ID: lnc-PRR32-1:1 
LNCipedia gene ID: lnc-PRR32-1
Ensembl Gene ID: ENSG00000237208
Ensembl Transcript ID: ENST00000438994
RefSeq ID: NR_110409
Location (hg19): chrX:125243745-125249545
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017010; ENST00000438994; ENST00000438994.1; RP11-13E5.2-001; OTTHUMT00000058182.1; NONHSAT138478; NR_110409; NR_110409.1
Alternative gene names: XLOC_008064; linc-CXorf64-1; ENSG00000237208; RP11-13E5.2; ENSG00000237208.1; OTTHUMG00000022349.1; AL445072.1; LOC101928495


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.7991 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR32-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf64-1:1
3.1 lnc-CXorf64-1:1
4.0 lnc-CXorf64-1:1
4.1 lnc-CXorf64-1:1
5.0 lnc-CXorf64-1:1
5.1 lnc-TEX13C-3:1
5.2 lnc-PRR32-1:1