Transcript: lnc-PRR34-1:2

Basic information

LNCipedia transcript ID: lnc-PRR34-1:2 
LNCipedia gene ID: lnc-PRR34-1
Ensembl Gene ID: ENSG00000231010
Ensembl Transcript ID: ENST00000439423
Location (hg19): chr22:46451620-46454040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1181 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439423; ENST00000439423.1; RP6-109B7.2-001; OTTHUMT00000318130.1; NONHSAT087274
Alternative gene names: ENSG00000231010; RP6-109B7.2; ENSG00000231010.1; OTTHUMG00000150444.1; AL121672.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.8067 non-coding 
CPAT coding probability 17.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR34-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf26-1:1
3.1 lnc-C22orf26-1:1
4.0 lnc-C22orf26-1:1
4.1 lnc-C22orf26-1:1
5.0 lnc-C22orf26-1:1
5.1 lnc-PRR34-1:1
5.2 lnc-PRR34-1:2