Transcript: lnc-PRRT1-1:9

Basic information

LNCipedia transcript ID: lnc-PRRT1-1:9 
LNCipedia gene ID: lnc-PRRT1-1
Ensembl Gene ID: ENSG00000284954
Ensembl Transcript ID: ENST00000497552
Location (hg19): chr6:32120579-32121685
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 543 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT108883; ENST00000497552.5
Alternative gene names: ENSG00000284954.1; AL662884.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -788.6543 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRRT1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPAT1-1:6
4.0 lnc-AGPAT1-1:6
4.1 lnc-AGPAT1-1:6
5.0 lnc-AGPAT1-1:6
5.1 lnc-DXO-6:9
5.2 lnc-PRRT1-1:9