Transcript: lnc-PRSS22-1:3

Basic information

LNCipedia transcript ID: lnc-PRSS22-1:3 
LNCipedia gene ID: lnc-PRSS22-1
Ensembl Gene ID: ENSG00000263280
Ensembl Transcript ID: ENST00000575693
Location (hg19): chr16:2916349-2917619
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 667 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575693.1; LA16c-325D7.2-001; OTTHUMT00000436475.1
Alternative gene names: ENSG00000263280.1; LA16c-325D7.2; OTTHUMG00000177363.1; AC003965.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1233 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS22-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS22-1:3
4.0 lnc-PRSS22-1:3
4.1 lnc-PRSS22-1:3
5.0 lnc-PRSS22-1:3
5.1 lnc-PKMYT1-14:7
5.2 lnc-PRSS22-1:3