Transcript: lnc-PRY-1:3

Basic information

LNCipedia transcript ID: lnc-PRY-1:3 
LNCipedia gene ID: lnc-PRY-1
Ensembl Gene ID: ENSG00000235059
Ensembl Transcript ID: ENST00000446299
Location (hg19): chrY:24585087-24630861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2939 bp
Exons: 13
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017615; ENST00000446299; ENST00000446299.1; AC008175.1-001; OTTHUMT00000101922.1; NONHSAT139682; NR_110413; ENST00000446299.5
Alternative gene names: XLOC_008300; linc-PRY; ENSG00000235059; AC008175.1; ENSG00000235059.1; OTTHUMG00000043582.3; ENSG00000235059.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5109 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRY-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRY-1:1
3.1 lnc-RBMY1J-1:1
4.0 lnc-PRY-1:3
4.1 lnc-PRY-1:3
5.0 lnc-PRY-1:3
5.1 lnc-PRY-1:3
5.2 lnc-PRY-1:3