Transcript: lnc-PRY-1:5

Basic information

LNCipedia transcript ID: lnc-PRY-1:5 
LNCipedia gene ID: lnc-PRY-1
Ensembl Gene ID: ENSG00000235059
Ensembl Transcript ID: ENST00000439653
Location (hg19): chrY:24626684-24631739
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017616; ENST00000439653; ENST00000439653.1; AC008175.1-002; OTTHUMT00000102216.1; NONHSAT139686
Alternative gene names: XLOC_008300; linc-PRY; ENSG00000235059; AC008175.1; ENSG00000235059.1; OTTHUMG00000043582.3; ENSG00000235059.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRY-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRY-1:3
3.1 lnc-RBMY1J-1:3
4.0 lnc-PRY-1:5
4.1 lnc-PRY-1:5
5.0 lnc-PRY-1:5
5.1 lnc-PRY-1:5
5.2 lnc-PRY-1:5