Transcript: lnc-PSCA-71:1

Basic information

LNCipedia transcript ID: lnc-PSCA-71:1 
LNCipedia gene ID: lnc-PSCA-71
Ensembl Gene ID: ENSG00000277332
Ensembl Transcript ID: ENST00000612629
RefSeq ID: NR_134305
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000612629.1; NR_134305.1
Alternative gene names: ENSG00000277332.1; AC145123.2; AC108002.3; LOC101928087


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -31.1266 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSCA-71:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-GPT-71:1
5.1 lnc-GPT-71:1
5.2 lnc-PSCA-71:1