Transcript: lnc-PSD3-1:2

Basic information

LNCipedia transcript ID: lnc-PSD3-1:2 
LNCipedia gene ID: lnc-PSD3-1
Ensembl Gene ID: ENSG00000253557
Ensembl Transcript ID: ENST00000517949
Location (hg19): chr8:18944405-19102999
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517949; ENST00000517949.1; RP11-1080G15.1-001; OTTHUMT00000374890.1; NONHSAT125352; ENST00000517949.5
Alternative gene names: ENSG00000253557; RP11-1080G15.1; ENSG00000253557.1; OTTHUMG00000163715.1; ENSG00000253557.5; AC100849.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0946 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSD3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSD3-1:2
3.1 lnc-PSD3-1:2
4.0 lnc-PSD3-1:2
4.1 lnc-PSD3-1:2
5.0 lnc-PSD3-1:2
5.1 lnc-EGR3-36:8
5.2 lnc-PSD3-1:2