Transcript: lnc-PSKH2-2:1

Basic information

LNCipedia transcript ID: lnc-PSKH2-2:1 
LNCipedia gene ID: lnc-PSKH2-2
Ensembl Gene ID: ENSG00000253675
Ensembl Transcript ID: ENST00000522679
Location (hg19): chr8:87111194-87166454
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 277 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522679.1; CTD-3118D11.2-001; OTTHUMT00000374652.1; NONHSAT127546
Alternative gene names: ENSG00000253675.1; CTD-3118D11.2; OTTHUMG00000163648.2; AC023194.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 20.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSKH2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC7A13-2:1
4.0 lnc-PSKH2-2:1
4.1 lnc-PSKH2-2:1
5.0 lnc-PSKH2-2:1
5.1 lnc-ZNF706-238:1
5.2 lnc-PSKH2-2:1