Transcript: lnc-PSMC3IP-3:1

Basic information

LNCipedia transcript ID: lnc-PSMC3IP-3:1 
LNCipedia gene ID: lnc-PSMC3IP-3
Location (hg19): chr17:40704456-40706766
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2311 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT053726; ENST00000590513.1
Alternative gene names: ENSG00000266962.1; RP11-400F19.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1218 non-coding 
CPAT coding probability 96.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PSMC3IP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMC3IP-3:1
4.0 lnc-PSMC3IP-3:1
4.1 lnc-PSMC3IP-3:1
5.0 lnc-PSMC3IP-3:1
5.1 lnc-BRCA1-21:5
5.2 lnc-PSMC3IP-3:1