Transcript: lnc-PSMD7-7:3

Basic information

LNCipedia transcript ID: lnc-PSMD7-7:3 
LNCipedia gene ID: lnc-PSMD7-7
Location (hg19): chr16:73798472-73802501
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 765 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024886; NONHSAT143645
Alternative gene names: XLOC_011785; linc-PSMD7-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.582 non-coding 
CPAT coding probability 5.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-7:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-44L9.1.1-1:2
3.1 lnc-RP11-44L9.1.1-7:2
4.0 lnc-RP11-44L9.1.1-7:2
4.1 lnc-RP11-44L9.1.1-7:2
5.0 lnc-RP11-44L9.1.1-7:2
5.1 lnc-MARVELD3-45:3
5.2 lnc-PSMD7-7:3