Transcript: lnc-PTAFR-9:1

Basic information

LNCipedia transcript ID: lnc-PTAFR-9:1 
LNCipedia gene ID: lnc-PTAFR-9
Location (hg19): chr1:28446960-28447832
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT001935
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.3363 non-coding 
CPAT coding probability 77.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTAFR-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTAFR-1:1
4.0 lnc-PTAFR-1:1
4.1 lnc-PTAFR-1:1
5.0 lnc-PTAFR-1:1
5.1 lnc-PTAFR-5:1
5.2 lnc-PTAFR-9:1