Transcript: lnc-PTBP2-11:1

Basic information

LNCipedia transcript ID: lnc-PTBP2-11:1 
LNCipedia gene ID: lnc-PTBP2-11
Location (hg19): chr1:98011495-98012708
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1214 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA28:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.7426 non-coding 
CPAT coding probability 32.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTBP2-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PTBP2-11:1
4.1 lnc-PTBP2-11:1
5.0 lnc-PTBP2-11:1
5.1 lnc-SLC30A7-70:1
5.2 lnc-PTBP2-11:1