Transcript: lnc-PTBP2-9:1

Basic information

LNCipedia transcript ID: lnc-PTBP2-9:1 
LNCipedia gene ID: lnc-PTBP2-9
Location (hg19): chr1:97774870-97775074
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 205 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: uc_35_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -349.7816 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTBP2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTBP2-9:1
4.0 lnc-PTBP2-9:1
4.1 lnc-PTBP2-9:1
5.0 lnc-PTBP2-9:1
5.1 lnc-SLC30A7-71:1
5.2 lnc-PTBP2-9:1