Transcript: lnc-PTCD2-3:2

Basic information

LNCipedia transcript ID: lnc-PTCD2-3:2 
LNCipedia gene ID: lnc-PTCD2-3
Location (hg19): chr5:71663446-71664222
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 777 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000607825.1
Alternative gene names: ENSG00000272365.1; RP11-389C8.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.9058 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTCD2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTCD2-3:2
4.0 lnc-PTCD2-3:2
4.1 lnc-PTCD2-3:2
5.0 lnc-PTCD2-3:2
5.1 lnc-MAP1B-3:2
5.2 lnc-PTCD2-3:2