Transcript: lnc-PTCH1-2:1

Basic information

LNCipedia transcript ID: lnc-PTCH1-2:1 
LNCipedia gene ID: lnc-PTCH1-2
Ensembl Gene ID: ENSG00000229345
Ensembl Transcript ID: ENST00000419620
Location (hg19): chr9:98361827-98368568
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015851; ENST00000419620; ENST00000419620.1; RP11-332M4.1-001; OTTHUMT00000053236.1; NONHSAT133384
Alternative gene names: XLOC_007785; linc-PTCH1-1; ENSG00000229345; RP11-332M4.1; ENSG00000229345.1; OTTHUMG00000020283.1; AL392185.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.2638 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTCH1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTCH1-2:1
3.1 lnc-PTCH1-2:1
4.0 lnc-PTCH1-2:1
4.1 lnc-PTCH1-2:1
5.0 lnc-PTCH1-2:1
5.1 lnc-FANCC-2:2
5.2 lnc-PTCH1-2:1