Transcript: lnc-PTGS1-1:3

Basic information

LNCipedia transcript ID: lnc-PTGS1-1:3 
LNCipedia gene ID: lnc-PTGS1-1
Location (hg19): chr9:125086887-125087594
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 708 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT134575; ENST00000602625.1
Alternative gene names: ENSG00000269979.1; RP11-498E2.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.7437 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGS1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRRF-1:1
4.0 lnc-MRRF-1:1
4.1 lnc-MRRF-1:1
5.0 lnc-MRRF-1:1
5.1 lnc-DAB2IP-12:1
5.2 lnc-PTGS1-1:3