Transcript: lnc-PTGS1-2:2

Basic information

LNCipedia transcript ID: lnc-PTGS1-2:2 
LNCipedia gene ID: lnc-PTGS1-2
Ensembl Gene ID: ENSG00000229245
Ensembl Transcript ID: ENST00000433572
Location (hg19): chr9:125165686-125211256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT134584; ENST00000433572.2
Alternative gene names: ENSG00000229245.2; RP11-542K23.7; AL359636.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0765 non-coding 
CPAT coding probability 4.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGS1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGS1-1:2
4.0 lnc-PTGS1-1:2
4.1 lnc-PTGS1-1:2
5.0 lnc-PTGS1-1:2
5.1 lnc-DAB2IP-15:2
5.2 lnc-PTGS1-2:2