Transcript: lnc-PTN-2:1

Basic information

LNCipedia transcript ID: lnc-PTN-2:1 
LNCipedia gene ID: lnc-PTN-2
Ensembl Gene ID: ENSG00000234352
Ensembl Transcript ID: ENST00000439694
Location (hg19): chr7:136468822-136866518
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2160 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439694; ENST00000439694.1; AC009264.1-001; OTTHUMT00000341008.1; NONHSAT123559; ENST00000439694.5
Alternative gene names: ENSG00000234352; AC009264.1; ENSG00000234352.2; OTTHUMG00000155657.2; ENSG00000234352.5; hsa-mir-490; ENSG00000234352.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4178 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTN-2:1
3.1 lnc-PTN-2:1
4.0 lnc-PTN-2:1
4.1 lnc-PTN-2:1
5.0 lnc-PTN-2:1
5.1 lnc-C7orf49-29:2
5.2 lnc-PTN-2:1