Transcript: lnc-PTN-2:2

Basic information

LNCipedia transcript ID: lnc-PTN-2:2 
LNCipedia gene ID: lnc-PTN-2
Ensembl Gene ID: ENSG00000234352
Ensembl Transcript ID: ENST00000425981
RefSeq ID: NR_046103
Location (hg19): chr7:136583520-136849088
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1538 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000425981.2; AC009264.1-002; OTTHUMT00000341009.2; NONHSAT123567; NR_046103; NR_046103.1
Alternative gene names: ENSG00000234352.2; AC009264.1; OTTHUMG00000155657.2; ENSG00000234352.5; hsa-mir-490; ENSG00000234352.9; LOC349160


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.8946 non-coding 
CPAT coding probability 34.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTN-2:2
4.0 lnc-PTN-2:2
4.1 lnc-PTN-2:2
5.0 lnc-PTN-2:2
5.1 lnc-C7orf49-29:4
5.2 lnc-PTN-2:2