Transcript: lnc-PTN-2:3

Basic information

LNCipedia transcript ID: lnc-PTN-2:3 
LNCipedia gene ID: lnc-PTN-2
Location (hg19): chr7:136584477-136849088
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 581 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000425981
Alternative gene names: ENSG00000234352; AC009264.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.8946 non-coding 
CPAT coding probability 35.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTN-2:2
3.1 lnc-PTN-2:3
4.0 lnc-PTN-2:3
4.1 lnc-PTN-2:3
5.0 lnc-PTN-2:3
5.1 lnc-C7orf49-29:3
5.2 lnc-PTN-2:3