Transcript: lnc-PTN-2:4

Basic information

LNCipedia transcript ID: lnc-PTN-2:4 
LNCipedia gene ID: lnc-PTN-2
Ensembl Gene ID: ENSG00000234352
Ensembl Transcript ID: ENST00000592183
Location (hg19): chr7:136470579-136866854
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 534 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592183.1; ENST00000592183.5
Alternative gene names: ENSG00000234352.5; hsa-mir-490; ENSG00000234352.9; AC009264.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 63.4603 coding 
CPAT coding probability 27.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTN-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTN-2:4
4.0 lnc-PTN-2:4
4.1 lnc-PTN-2:4
5.0 lnc-PTN-2:4
5.1 lnc-C7orf49-29:1
5.2 lnc-PTN-2:4