Transcript: lnc-PTN-2:6

Basic information

LNCipedia transcript ID: lnc-PTN-2:6 
LNCipedia gene ID: lnc-PTN-2
Location (hg19): chr7:136428512-136849022
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 726 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT123556; ENST00000597642.1
Alternative gene names: ENSG00000234352.5; hsa-mir-490


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.7431 non-coding 
CPAT coding probability 36.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTN-2:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTN-2:6
4.0 lnc-PTN-2:6
4.1 lnc-PTN-2:6
5.0 lnc-PTN-2:6
5.1 lnc-C7orf49-29:6
5.2 lnc-PTN-2:6