Transcript: lnc-PTP4A3-3:3

Basic information

LNCipedia transcript ID: lnc-PTP4A3-3:3 
LNCipedia gene ID: lnc-PTP4A3-3
Ensembl Gene ID: ENSG00000254291
Ensembl Transcript ID: ENST00000523604
Location (hg19): chr8:142336229-142337236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523604.1; RP11-10J21.6-001; OTTHUMT00000378964.1
Alternative gene names: ENSG00000254291.1; RP11-10J21.6; OTTHUMG00000164481.1; AC011676.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.3532 non-coding 
CPAT coding probability 15.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTP4A3-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTP4A3-3:3
4.0 lnc-PTP4A3-3:3
4.1 lnc-PTP4A3-3:3
5.0 lnc-PTP4A3-3:3
5.1 lnc-GPT-91:3
5.2 lnc-PTP4A3-3:3