Transcript: lnc-PTPN14-1:1

Basic information

LNCipedia transcript ID: lnc-PTPN14-1:1 
LNCipedia gene ID: lnc-PTPN14-1
Ensembl Gene ID: ENSG00000228470
Ensembl Transcript ID: ENST00000443622
Location (hg19): chr1:214517515-214530958
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 518 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443622.1; RP11-176D17.3-001; OTTHUMT00000098640.1; NONHSAT009457
Alternative gene names: ENSG00000228470.1; RP11-176D17.3; OTTHUMG00000041153.1; AL929236.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.4699 non-coding 
CPAT coding probability 9.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN14-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN14-1:1
4.0 lnc-PTPN14-1:1
4.1 lnc-PTPN14-1:1
5.0 lnc-PTPN14-1:1
5.1 lnc-IRF6-68:1
5.2 lnc-PTPN14-1:1