Transcript: lnc-PTPN14-2:6

Basic information

LNCipedia transcript ID: lnc-PTPN14-2:6 
LNCipedia gene ID: lnc-PTPN14-2
Location (hg19): chr1:214447846-214454848
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7003 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000093860.1|ENCT00000037610.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.1031 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN14-2:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTPN14-2:6
5.0 lnc-PTPN14-2:6
5.1 lnc-IRF6-66:2
5.2 lnc-PTPN14-2:6