Transcript: lnc-PTPN2-2:6

Basic information

LNCipedia transcript ID: lnc-PTPN2-2:6 
LNCipedia gene ID: lnc-PTPN2-2
RefSeq ID: NR_110763
Location (hg19): chr18:12739485-12749421
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110763; NR_110763.1
Alternative gene names: LOC100996324


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -42.8522 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPN2-2:6 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN2-2:6
4.0 lnc-PTPN2-2:6
4.1 lnc-PTPN2-2:6
5.0 lnc-PTPN2-2:6
5.1 lnc-SMAD2-256:10
5.2 lnc-PTPN2-2:6