Transcript: lnc-PTPN7-1:1

Basic information

LNCipedia transcript ID: lnc-PTPN7-1:1 
LNCipedia gene ID: lnc-PTPN7-1
Location (hg19): chr1:202104330-202107162
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 431 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT008799
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
DLPGALDEK 100% sense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score 446.2927 coding 
CPAT coding probability 16.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTPN7-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN7-1:1
4.0 lnc-PTPN7-1:1
4.1 lnc-PTPN7-1:1
5.0 lnc-PTPN7-1:1
5.1 lnc-MYOG-32:1
5.2 lnc-PTPN7-1:1