Transcript: lnc-PTPRE-1:2

Basic information

LNCipedia transcript ID: lnc-PTPRE-1:2 
LNCipedia gene ID: lnc-PTPRE-1
Location (hg19): chr10:130084199-130115983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3019 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000536791
Alternative gene names: ENSG00000256413; AL390763.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.9597 non-coding 
CPAT coding probability 14.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRE-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRE-1:2
3.1 lnc-PTPRE-1:2
4.0 lnc-PTPRE-1:2
4.1 lnc-PTPRE-1:2
5.0 lnc-PTPRE-1:2
5.1 lnc-PTPRE-1:2
5.2 lnc-PTPRE-1:2