Transcript: lnc-PTPRJ-2:1

Basic information

LNCipedia transcript ID: lnc-PTPRJ-2:1 
LNCipedia gene ID: lnc-PTPRJ-2
Location (hg19): chr11:47862876-47863234
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT021288
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.7861 non-coding 
CPAT coding probability 11.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRJ-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPRJ-2:1
4.0 lnc-PTPRJ-2:1
4.1 lnc-PTPRJ-2:1
5.0 lnc-PTPRJ-2:1
5.1 lnc-OR5L2-40:1
5.2 lnc-PTPRJ-2:1