Transcript: lnc-PTPRN2-2:1

Basic information

LNCipedia transcript ID: lnc-PTPRN2-2:1 
LNCipedia gene ID: lnc-PTPRN2-2
Ensembl Gene ID: ENSG00000229660
Ensembl Transcript ID: ENST00000442017
Location (hg19): chr7:157074230-157075380
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013284; ENST00000442017; ENST00000442017.1; RP5-1142J19.1-001; OTTHUMT00000348117.1; NONHSAT124473
Alternative gene names: XLOC_006676; linc-MNX1-2; ENSG00000229660; RP5-1142J19.1; ENSG00000229660.1; OTTHUMG00000157240.1; AC004975.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3772 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTPRN2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRN2-2:1
3.1 lnc-PTPRN2-2:1
4.0 lnc-PTPRN2-2:1
4.1 lnc-PTPRN2-2:1
5.0 lnc-PTPRN2-2:1
5.1 lnc-MNX1-2:2
5.2 lnc-PTPRN2-2:1