Transcript: lnc-PTS-1:1

Basic information

LNCipedia transcript ID: lnc-PTS-1:1 
LNCipedia gene ID: lnc-PTS-1
Ensembl Gene ID: ENSG00000250303
Ensembl Transcript ID: ENST00000504610
RefSeq ID: NR_126004
Location (hg19): chr11:112141472-112233257
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2749 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000504610; ENST00000504610.2; RP11-356J5.12-005; OTTHUMT00000393660.1; NONHSAT024202; NR_126004; NR_126004.1
Alternative gene names: ENSG00000250303; RP11-356J5.12; ENSG00000250303.2; OTTHUMG00000167191.1; ENSG00000250303.3; AP002884.3; LOC283140; AP002884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3107 non-coding 
CPAT coding probability 25.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTS-1:1
3.1 lnc-PTS-1:1
4.0 lnc-PTS-1:1
4.1 lnc-PTS-1:1
5.0 lnc-PTS-1:1
5.1 lnc-PTS-7:6
5.2 lnc-PTS-1:1