Transcript: lnc-PTS-1:2

Basic information

LNCipedia transcript ID: lnc-PTS-1:2 
LNCipedia gene ID: lnc-PTS-1
Location (hg19): chr11:112151209-112162495
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000532168; ENST00000532168.1; RP11-356J5.12-002; OTTHUMT00000393661.1; NONHSAT024204
Alternative gene names: ENSG00000250303; RP11-356J5.12; ENSG00000250303.2; OTTHUMG00000167191.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.5714 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTS-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTS-1:2
3.1 lnc-PTS-1:2
4.0 lnc-PTS-1:2
4.1 lnc-PTS-1:2
5.0 lnc-PTS-1:2
5.1 lnc-PTS-7:9
5.2 lnc-PTS-1:2