Transcript: lnc-PUM3-10:1

Basic information

LNCipedia transcript ID: lnc-PUM3-10:1 
LNCipedia gene ID: lnc-PUM3-10
Location (hg19): chr9:2010061-2015073
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5013 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000107487.1|ENCT00000452331.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.7327 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUM3-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-KIAA0020-10:1
5.0 lnc-KIAA0020-10:1
5.1 lnc-CER1-86:1
5.2 lnc-PUM3-10:1