Transcript: lnc-PUM3-1:1

Basic information

LNCipedia transcript ID: lnc-PUM3-1:1 
LNCipedia gene ID: lnc-PUM3-1
Ensembl Gene ID: ENSG00000236199
Ensembl Transcript ID: ENST00000426860
Location (hg19): chr9:2041900-2046023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 420 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426860.1; RP11-264I13.2-001; OTTHUMT00000051502.1; NONHSAT129985
Alternative gene names: ENSG00000236199.1; RP11-264I13.2; OTTHUMG00000019444.1; AL359076.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.5685 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUM3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-2:1
4.0 lnc-KIAA0020-2:1
4.1 lnc-KIAA0020-2:1
5.0 lnc-KIAA0020-2:1
5.1 lnc-CER1-85:1
5.2 lnc-PUM3-1:1