Transcript: lnc-PUM3-3:1

Basic information

LNCipedia transcript ID: lnc-PUM3-3:1 
LNCipedia gene ID: lnc-PUM3-3
Location (hg19): chr9:2715909-2718334
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2426 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT130006
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 88.0014 coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PUM3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-3:1
4.0 lnc-KIAA0020-3:1
4.1 lnc-KIAA0020-3:1
5.0 lnc-KIAA0020-3:1
5.1 lnc-CER1-81:1
5.2 lnc-PUM3-3:1