Transcript: lnc-PUM3-5:1

Basic information

LNCipedia transcript ID: lnc-PUM3-5:1 
LNCipedia gene ID: lnc-PUM3-5
Location (hg19): chr9:2900320-2900804
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 485 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT130014
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
SWNETLTSR 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0041 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PUM3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-5:1
4.0 lnc-KIAA0020-5:1
4.1 lnc-KIAA0020-5:1
5.0 lnc-KIAA0020-5:1
5.1 lnc-CER1-77:1
5.2 lnc-PUM3-5:1