Transcript: lnc-PUS3-1:1

Basic information

LNCipedia transcript ID: lnc-PUS3-1:1 
LNCipedia gene ID: lnc-PUS3-1
Ensembl Gene ID: ENSG00000260209
Ensembl Transcript ID: ENST00000569238
Location (hg19): chr11:125743344-125744423
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1080 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569238.1; RP11-680F20.10-001; OTTHUMT00000422467.1; NONHSAT024979
Alternative gene names: ENSG00000260209.1; RP11-680F20.10; OTTHUMG00000173206.1; AP000842.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6185 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUS3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PUS3-1:1
4.0 lnc-PUS3-1:1
4.1 lnc-PUS3-1:1
5.0 lnc-PUS3-1:1
5.1 lnc-ADAMTS8-52:2
5.2 lnc-PUS3-1:1