Transcript: lnc-PUS3-2:4

Basic information

LNCipedia transcript ID: lnc-PUS3-2:4 
LNCipedia gene ID: lnc-PUS3-2
Ensembl Gene ID: ENSG00000255027
Ensembl Transcript ID: ENST00000533033
Location (hg19): chr11:125773142-125808811
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533033.2; RP11-680F20.9-002; OTTHUMT00000386786.2; NONHSAT024984
Alternative gene names: ENSG00000255027.2; RP11-680F20.9; OTTHUMG00000165871.2; AP000842.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.5274 non-coding 
CPAT coding probability 5.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUS3-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-680F20.4.1-2:2
4.0 lnc-RP11-680F20.9.1-2:2
4.1 lnc-RP11-680F20.9.1-2:2
5.0 lnc-RP11-680F20.9.1-2:2
5.1 lnc-ADAMTS8-51:2
5.2 lnc-PUS3-2:4