Transcript: lnc-PUS7L-1:1

Basic information

LNCipedia transcript ID: lnc-PUS7L-1:1 
LNCipedia gene ID: lnc-PUS7L-1
Location (hg19): chr12:44112796-44117803
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5008 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000553202; ENST00000553202.1; RP11-350F4.2-001; OTTHUMT00000403930.1; NONHSAT027801
Alternative gene names: ENSG00000257742; RP11-350F4.2; ENSG00000257742.1; OTTHUMG00000169422.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.3111 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PUS7L-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PUS7L-1:1
3.1 lnc-PUS7L-1:1
4.0 lnc-PUS7L-1:1
4.1 lnc-PUS7L-1:1
5.0 lnc-PUS7L-1:1
5.1 lnc-RPAP3-41:1
5.2 lnc-PUS7L-1:1