Transcript: lnc-PWP1-1:4

Basic information

LNCipedia transcript ID: lnc-PWP1-1:4 
LNCipedia gene ID: lnc-PWP1-1
Ensembl Gene ID: ENSG00000258136
Ensembl Transcript ID: ENST00000546829
Location (hg19): chr12:108130332-108132225
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546829.1; RP11-864J10.4-002; OTTHUMT00000406552.1; NONHSAT030508
Alternative gene names: ENSG00000258136.1; RP11-864J10.4; OTTHUMG00000169915.1; AC007622.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.2037 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PWP1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PWP1-1:1
4.0 lnc-ASCL4-1:2
4.1 lnc-ASCL4-1:2
5.0 lnc-ASCL4-1:2
5.1 lnc-POLR3B-10:1
5.2 lnc-PWP1-1:4