Transcript: lnc-PWP2-3:1

Basic information

LNCipedia transcript ID: lnc-PWP2-3:1 
LNCipedia gene ID: lnc-PWP2-3
Location (hg19): chr21:45622767-45627388
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1538 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232124.1|HBMT00000922508.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.7861 non-coding 
CPAT coding probability 36.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PWP2-3:1 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C21orf33-2:5
5.0 lnc-C21orf33-2:5
5.1 lnc-RRP1-56:1
5.2 lnc-PWP2-3:1